3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12625

Details:

PFam ID : PF12625

PFam Domain Description : Arabinose-binding domain of AraC transcription regulator, N-term

Number of Sequence in 50% Dataset : 592

Number of Sequence in Full Dataset : 1174

Average sequence length: 179.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12625	F0VDQ8_NEOCA_1_73	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12625	D4ZM90_SHEVD_26_230	100

Sequence based PCA Plot of the family - PF12625 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=165 Length=8
Motif2 Start=1 Length=8
Motif3 Start=197 Length=8
Motif4 Start=182 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay