3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12624

Details:

PFam ID : PF12624

PFam Domain Description : N-terminal region of Chorein, a TM vesicle-mediated sorter

Number of Sequence in 50% Dataset : 169

Number of Sequence in Full Dataset : 467

Average sequence length: 110.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12624	F0VDQ8_NEOCA_1_73	77.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12624	B7FUH2_PHATC_2_133	100

Sequence based PCA Plot of the family - PF12624 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay