3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12622

Details:

PFam ID : PF12622

PFam Domain Description : mRNA biogenesis factor

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 37

Average sequence length: 62.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12622	C4R4M4_PICPG_12_99	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12622	Q4P942_USTMA_135_210	100

Sequence based PCA Plot of the family - PF12622 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=11
Motif2 Start=24 Length=8
Motif3 Start=6 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay