3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12619

Details:

PFam ID : PF12619

PFam Domain Description : Mini-chromosome maintenance protein 2

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 155

Average sequence length: 142.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12619	Q7K7J6_CAEEL_4_91	19.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12619	C9J013_HUMAN_37_103	96.7

Sequence based PCA Plot of the family - PF12619 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=27 Length=8
Motif3 Start=64 Length=8
Motif4 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay