3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12617

Details:

PFam ID : PF12617

PFam Domain Description : Iron-Sulfur binding protein C terminal

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 62

Average sequence length: 180.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12617	D8LLZ8_ECTSI_358_538	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12617	Q7UZU5_PROMP_155_333	100

Sequence based PCA Plot of the family - PF12617 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=136 Length=8
Motif2 Start=113 Length=8
Motif3 Start=8 Length=8
Motif4 Start=70 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay