3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12612

Details:

PFam ID : PF12612

PFam Domain Description : Tubulin folding cofactor D C terminal

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 163

Average sequence length: 171.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12612	Q22YV4_TETTH_846_1076	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12612	C5KMV6_9ALVE_694_919	100

Sequence based PCA Plot of the family - PF12612 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=81 Length=8
Motif3 Start=154 Length=8
Motif4 Start=13 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay