3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12606

Details:

PFam ID : PF12606

PFam Domain Description : Tumour necrosis factor receptor superfamily member 19

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 38

Average sequence length: 47.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12606	A7SPP6_NEMVE_332_424	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12606	Q7T0N2_XENLA_1_37	51

Sequence based PCA Plot of the family - PF12606 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay