3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12589

Details:

PFam ID : PF12589

PFam Domain Description : Methyltransferase involved in Williams-Beuren syndrome

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 158

Average sequence length: 80.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12589	D1ZAR9_SORMK_77_137	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12589	E6ZX10_9BASI_207_297	100

Sequence based PCA Plot of the family - PF12589 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=62 Length=8
Motif4 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay