3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12584

Details:

PFam ID : PF12584

PFam Domain Description : Trafficking protein particle complex subunit 10, TRAPPC10

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 119

Average sequence length: 151.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12584	A8Y1L1_CAEBR_135_260	96.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12584	E3L7G4_PUCGT_62_236	99.1

Sequence based PCA Plot of the family - PF12584 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay