3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12578

Details:

PFam ID : PF12578

PFam Domain Description : Myotubularin-associated protein

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 56

Average sequence length: 115.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12578	A8QHU8_BRUMA_533_595	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12578	MTMRB_MOUSE_553_688	89

Sequence based PCA Plot of the family - PF12578 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=17
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay