3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12569

Details:

PFam ID : PF12569

PFam Domain Description : NMDA receptor-regulated protein 1

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 223

Average sequence length: 341.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12569	C4SU46_YERFR_85_196	56.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12569	B5VFM7_YEAS6_2_108	100

Sequence based PCA Plot of the family - PF12569 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=196 Length=8
Motif2 Start=63 Length=8
Motif3 Start=2 Length=8
Motif4 Start=313 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay