3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12568

Details:

PFam ID : PF12568

PFam Domain Description : Acetyltransferase (GNAT) domain

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 67

Average sequence length: 123.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12568	F1S5E9_PIG_104_163	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12568	Q1ZEK2_9GAMM_2_137	100

Sequence based PCA Plot of the family - PF12568 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=18
Motif2 Start=13 Length=8
Motif3 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay