3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12558

Details:

PFam ID : PF12558

PFam Domain Description : ATP-binding cassette cobalt transporter

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 112

Average sequence length: 72.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12558	C6IXX0_9BACL_235_297	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12558	Y020_ONYPE_236_324	100

Sequence based PCA Plot of the family - PF12558 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=9 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay