3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12556

Details:

PFam ID : PF12556

PFam Domain Description : Cobaltochelatase CobS subunit N terminal

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 152

Average sequence length: 35.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12556	C0WLG4_9CORY_333_386	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12556	A5ETB8_BRASB_1_30	99.3

Sequence based PCA Plot of the family - PF12556 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=20 Length=11
Motif2 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay