3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12555

Details:

PFam ID : PF12555

PFam Domain Description : Thiamine pyrophosphokinase C terminal

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 99

Average sequence length: 52.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12555	C0WLG4_9CORY_333_386	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12555	A4FKB2_SACEN_335_387	92.8

Sequence based PCA Plot of the family - PF12555 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay