3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12550

Details:

PFam ID : PF12550

PFam Domain Description : Transcriptional activator of glycolytic enzymes

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 99

Average sequence length: 77.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12550	C5DIH6_LACTC_524_615	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12550	C5DIH6_LACTC_524_615	100

Sequence based PCA Plot of the family - PF12550 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay