3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12545

Details:

PFam ID : PF12545

PFam Domain Description : Filamentous haemagglutinin family outer membrane protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 48

Average sequence length: 110.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12545	A9G2E4_SORC5_371_401	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12545	A5G4R9_GEOUR_3142_3264	100

Sequence based PCA Plot of the family - PF12545 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=1 Length=8
Motif3 Start=81 Length=11
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay