3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12544

Details:

PFam ID : PF12544

PFam Domain Description : Lysine-2,3-aminomutase

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 230

Average sequence length: 76.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12544	A9G2E4_SORC5_371_401	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12544	D0LI59_HALO1_327_418	100

Sequence based PCA Plot of the family - PF12544 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay