3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12539

Details:

PFam ID : PF12539

PFam Domain Description : Chromosome segregation protein Csm1/Pcs1

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 51

Average sequence length: 87.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12539	A7S6K1_NEMVE_479_566	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12539	C4Y5M4_CLAL4_258_366	100

Sequence based PCA Plot of the family - PF12539 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=6 Length=18
Motif3 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay