3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12535

Details:

PFam ID : PF12535

PFam Domain Description : Hydrolase of X-linked nucleoside diphosphate N terminal

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 172

Average sequence length: 56.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12535	A6WCK1_KINRD_7_67	5.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12535	A6WCK1_KINRD_7_67	99.4

Sequence based PCA Plot of the family - PF12535 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay