3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12534

Details:

PFam ID : PF12534

PFam Domain Description : Leucine-rich repeat containing protein 8

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 42

Average sequence length: 61

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12534	C3YLY5_BRAFL_4_62	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12534	Q4G0W7_HUMAN_1_55	63

Sequence based PCA Plot of the family - PF12534 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=1 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay