3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12533

Details:

PFam ID : PF12533

PFam Domain Description : Neuronal helix-loop-helix transcription factor

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 40

Average sequence length: 114.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12533	B7Q4U8_IXOSC_113_235	9.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12533	D2H525_AILME_143_213	100

Sequence based PCA Plot of the family - PF12533 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=11
Motif2 Start=11 Length=8
Motif3 Start=2 Length=8
Motif4 Start=74 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay