3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12531

Details:

PFam ID : PF12531

PFam Domain Description : DNA-K related protein

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 70

Average sequence length: 240.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12531	E4XWU6_OIKDI_421_561	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12531	E8R202_ISOPI_693_950	100

Sequence based PCA Plot of the family - PF12531 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=83 Length=8
Motif2 Start=134 Length=8
Motif3 Start=33 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay