3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12529

Details:

PFam ID : PF12529

PFam Domain Description : Xylosyltransferase C terminal

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 50

Average sequence length: 165.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12529	A7SHI4_NEMVE_367_549	95

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12529	A7SHI4_NEMVE_367_549	100

Sequence based PCA Plot of the family - PF12529 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=132 Length=8
Motif3 Start=17 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay