3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12522

Details:

PFam ID : PF12522

PFam Domain Description : Cytomegalovirus glycoprotein N terminal

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 10

Average sequence length: 24.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12522	C5GB25_AJEDR_3_69	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12522	Q8QVD9_HCMV_8_34	100

Sequence based PCA Plot of the family - PF12522 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay