3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12513

Details:

PFam ID : PF12513

PFam Domain Description : Mitochondrial degradasome RNA helicase subunit C terminal

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 169

Average sequence length: 47.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12513	E6QLY5_9ZZZZ_769_816	59.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12513	B9IJW6_POPTR_389_419	99.4

Sequence based PCA Plot of the family - PF12513 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay