3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12498

Details:

PFam ID : PF12498

PFam Domain Description : Basic leucine-zipper C terminal

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 58

Average sequence length: 107.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12498	D7TUI6_VITVI_336_377	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12498	A9NUK0_PICSI_396_513	100

Sequence based PCA Plot of the family - PF12498 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=3 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay