3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12497

Details:

PFam ID : PF12497

PFam Domain Description : Estrogen receptor beta

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 88

Average sequence length: 104.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12497	B2NIY5_XENLA_1_69	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12497	B2NIY5_XENLA_1_69	100

Sequence based PCA Plot of the family - PF12497 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=17
Motif2 Start=1 Length=8
Motif3 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay