3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12496

Details:

PFam ID : PF12496

PFam Domain Description : Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 53

Average sequence length: 141.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12496	A8DZD4_DANRE_77_219	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12496	A8DZD4_DANRE_77_219	100

Sequence based PCA Plot of the family - PF12496 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=129 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay