3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12491

Details:

PFam ID : PF12491

PFam Domain Description : Apolipoprotein B100 C terminal

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 7

Average sequence length: 45.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12491	D7MUC5_ARALL_446_690	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12491	F1NRG6_CHICK_291_348	100

Sequence based PCA Plot of the family - PF12491 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay