3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12490 Details: PFam ID : PF12490 PFam Domain Description : Breast carcinoma amplified sequence 3 Number of Sequence in 50% Dataset : 32 Number of Sequence in Full Dataset : 71 Average sequence length: 216.8 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF12490D7MUC5_ARALL_446_690100 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF12490B7PBE2_IXOSC_263_522100 Sequence based PCA Plot of the family - PF12490 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 1 motifsMotif1 Start=1 Length=36 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF12490
PFam Domain Description : Breast carcinoma amplified sequence 3
Number of Sequence in 50% Dataset : 32
Number of Sequence in Full Dataset : 71
Average sequence length: 216.8
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER