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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12490
Details:

PFam ID : PF12490

PFam Domain Description : Breast carcinoma amplified sequence 3

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 71

Average sequence length: 216.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF12490D7MUC5_ARALL_446_690100
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF12490B7PBE2_IXOSC_263_522100
Sequence based PCA Plot of the family - PF12490 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay