3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12489

Details:

PFam ID : PF12489

PFam Domain Description : Nuclear coactivator

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 26

Average sequence length: 115.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12489	C0H940_SALSA_192_336	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12489	C0H940_SALSA_192_336	56

Sequence based PCA Plot of the family - PF12489 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay