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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12486
Details:

PFam ID : PF12486

PFam Domain Description : ImpA domain protein

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 65

Average sequence length: 135.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF12486C1MER8_9ENTR_297_44422.2
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF12486C1MER8_9ENTR_297_444100
Sequence based PCA Plot of the family - PF12486 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=21
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay