3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12483

Details:

PFam ID : PF12483

PFam Domain Description : E3 Ubiquitin ligase

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 123

Average sequence length: 143.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12483	C1FJQ7_MICSR_128_277	29.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12483	E9C106_9EUKA_84_260	100

Sequence based PCA Plot of the family - PF12483 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=95 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay