3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12478

Details:

PFam ID : PF12478

PFam Domain Description : Ubiquitin-associated protein 2

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 20

Average sequence length: 32.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12478	D0Z4T1_LISDA_6_36	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12478	E9BVW7_9EUKA_307_337	100

Sequence based PCA Plot of the family - PF12478 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay