3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12475

Details:

PFam ID : PF12475

PFam Domain Description : Amdovirus non-structural protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 21

Average sequence length: 43.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12475	E9QCM7_DANRE_387_462	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12475	E9N6A2_9VIRU_1_47	69

Sequence based PCA Plot of the family - PF12475 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay