3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12473

Details:

PFam ID : PF12473

PFam Domain Description : Kinesin protein

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 156

Average sequence length: 126.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12473	A2AH74_MOUSE_1_92	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12473	B4LDR3_DROVI_401_544	100

Sequence based PCA Plot of the family - PF12473 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=39 Length=8
Motif2 Start=30 Length=8
Motif3 Start=12 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay