3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12471

Details:

PFam ID : PF12471

PFam Domain Description : GTP cyclohydrolase N terminal

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 82

Average sequence length: 184.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12471	B7FNY5_PHATC_190_265	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12471	B7FNY5_PHATC_54_195	100

Sequence based PCA Plot of the family - PF12471 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=44 Length=14
Motif3 Start=85 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay