3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12469

Details:

PFam ID : PF12469

PFam Domain Description : CRISPR-associated protein

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 138

Average sequence length: 121.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12469	B1QMY4_CLOBO_4_156	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12469	Q8TVU1_METKA_147_248	100

Sequence based PCA Plot of the family - PF12469 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=8
Motif2 Start=1 Length=18
Motif3 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay