3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12468

Details:

PFam ID : PF12468

PFam Domain Description : Type III secretion system leucine rich repeat protein

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 35

Average sequence length: 43.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12468	E0WV28_9ENTR_25_65	7.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12468	D1TSL6_YERPE_1_49	100

Sequence based PCA Plot of the family - PF12468 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay