3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12462

Details:

PFam ID : PF12462

PFam Domain Description : DNA helicase IV / RNA helicase N terminal

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 85

Average sequence length: 157.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12462	A1VWJ4_POLNA_3_180	36.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12462	C4LER9_TOLAT_4_168	100

Sequence based PCA Plot of the family - PF12462 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay