3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12460

Details:

PFam ID : PF12460

PFam Domain Description : NER and RNAPII transcription protein n terminal

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 96

Average sequence length: 60.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12460	C6HLF9_AJECH_38_86	43.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12460	A7THD9_VANPO_7_72	96.8

Sequence based PCA Plot of the family - PF12460 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay