3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12458

Details:

PFam ID : PF12458

PFam Domain Description : ATPase involved in DNA repair

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 52

Average sequence length: 422.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12458	E9CBW0_9EUKA_2_72	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12458	A8T311_9VIBR_28_478	100

Sequence based PCA Plot of the family - PF12458 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=57 Length=17
Motif3 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay