3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12457

Details:

PFam ID : PF12457

PFam Domain Description : Tuftelin interacting protein N terminal

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 122

Average sequence length: 99.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12457	E9CBW0_9EUKA_2_72	13.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12457	F0YEB0_9STRA_1_84	100

Sequence based PCA Plot of the family - PF12457 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=13 Length=8
Motif3 Start=29 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay