3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12455

Details:

PFam ID : PF12455

PFam Domain Description : Dynein associated protein

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 88

Average sequence length: 255.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12455	Q4SSB9_TETNG_520_618	62.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12455	F2UMD3_9EUKA_594_887	100

Sequence based PCA Plot of the family - PF12455 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=182 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay