3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12454

Details:

PFam ID : PF12454

PFam Domain Description : GPI-anchored cell wall organization protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 28

Average sequence length: 38.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12454	D8RGK1_SELML_224_348	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12454	Q0USE4_PHANO_3_38	96.2

Sequence based PCA Plot of the family - PF12454 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay