3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12451

Details:

PFam ID : PF12451

PFam Domain Description : Vacuolar protein sorting protein 11 C terminal

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 85

Average sequence length: 48.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12451	F0UNT2_AJECA_903_940	13.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12451	A5E7T1_LODEL_1056_1104	97.6

Sequence based PCA Plot of the family - PF12451 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=35 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay