3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12448

Details:

PFam ID : PF12448

PFam Domain Description : Kinesin associated protein

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 59

Average sequence length: 161.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12448	E7FGK6_DANRE_361_526	29.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12448	Q38B84_9TRYP_163_309	67

Sequence based PCA Plot of the family - PF12448 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay