3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12443

Details:

PFam ID : PF12443

PFam Domain Description : AT-hook-containing transcription factor

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 13

Average sequence length: 94

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12443	Q6AYG6_RAT_324_427	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12443	Q3TPF6_MOUSE_1_52	58

Sequence based PCA Plot of the family - PF12443 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=97 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay