3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12440

Details:

PFam ID : PF12440

PFam Domain Description : Melanoma associated antigen family N terminal

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 90

Average sequence length: 87.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12440	D3ZHL4_RAT_3_97	10.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12440	Q95KZ1_FELCA_3_109	94.3

Sequence based PCA Plot of the family - PF12440 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay